HL_8BUU_004

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.229

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BUU|1|A|C|136
8BUU|1|A|G|137
8BUU|1|A|U|138
8BUU|1|A|A|139
8BUU|1|A|A|140
8BUU|1|A|U|141
8BUU|1|A|G|142
8BUU|1|A|G|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23