HL_8BUU_006

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8BUU|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_006 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.075

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BUU|1|A|G|197
8BUU|1|A|A|198
8BUU|1|A|A|199
8BUU|1|A|A|200
8BUU|1|A|C|201
8BUU|1|A|A|202
8BUU|1|A|U|203
8BUU|1|A|C|204

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28