HL_8BUU_017

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUAACG

Length

8 nucleotides

Bulged bases

8BUU|1|A|U|591, 8BUU|1|A|C|594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.126

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

8BUU|1|A|C|588
8BUU|1|A|G|589
8BUU|1|A|U|590
8BUU|1|A|U|591
8BUU|1|A|A|592
8BUU|1|A|A|593
8BUU|1|A|C|594
8BUU|1|A|G|595

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21