HL_8BUU_028

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_028 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0873

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BUU|1|A|G|1024
8BUU|1|A|A|1025
8BUU|1|A|A|1026
8BUU|1|A|A|1027
8BUU|1|A|C|1028
8BUU|1|A|A|1029
8BUU|1|A|G|1030
8BUU|1|A|C|1031

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21

Chain Z

50S ribosomal protein L30