HL_8BUU_055
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGUAAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BUU_055 not in the Motif Atlas
- Homologous match to HL_4WF9_052
- Geometric discrepancy: 0.1312
- The information below is about HL_4WF9_052
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
8BUU|1|A|U|2353
8BUU|1|A|G|2354
8BUU|1|A|U|2355
8BUU|1|A|A|2356
8BUU|1|A|A|2357
8BUU|1|A|A|2358
8BUU|1|A|G|2359
8BUU|1|A|G|2360
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain W
- 50S ribosomal protein L27
Coloring options: