HL_8BUU_058

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

8BUU|1|A|C|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0898

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

8BUU|1|A|C|2433
8BUU|1|A|G|2434
8BUU|1|A|C|2435
8BUU|1|A|A|2436
8BUU|1|A|U|2437
8BUU|1|A|G|2438
8BUU|1|A|G|2439
8BUU|1|A|A|2440
8BUU|1|A|A|2441
8BUU|1|A|G|2442

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15