HL_8BUU_066

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_066 not in the Motif Atlas

Geometric match to HL_5TPY_006

Geometric discrepancy: 0.1554

The information below is about HL_5TPY_006

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8BUU|1|A|C|2823
8BUU|1|A|G|2824
8BUU|1|A|C|2825
8BUU|1|A|A|2826
8BUU|1|A|A|2827
8BUU|1|A|G|2828

Current chains

Chain A

23S rRNA

Nearby chains