HL_8BUU_084

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUCGG

Length

6 nucleotides

Bulged bases

8BUU|1|a|U|429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_084 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.1849

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8BUU|1|a|U|427
8BUU|1|a|U|428
8BUU|1|a|U|429
8BUU|1|a|C|430
8BUU|1|a|G|431
8BUU|1|a|G|432

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain d

30S ribosomal protein S4