HL_8BUU_089

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_089 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.0721

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8BUU|1|a|C|735
8BUU|1|a|G|736
8BUU|1|a|A|737
8BUU|1|a|A|738
8BUU|1|a|G|739
8BUU|1|a|G|740

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S15

Chain r

30S ribosomal protein S18