HL_8BYV_032

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BYV_032 not in the Motif Atlas

Geometric match to HL_3E5C_002

Geometric discrepancy: 0.1063

The information below is about HL_3E5C_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8BYV|1|a|C|1527
8BYV|1|a|G|1528
8BYV|1|a|G|1529
8BYV|1|a|A|1530
8BYV|1|a|A|1531
8BYV|1|a|G|1532

Current chains

Chain a

16S ribosomal RNA

Nearby chains