HL_8C01_013

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C01_013 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1089

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8C01|1|2|A|520
8C01|1|2|A|521
8C01|1|2|U|522
8C01|1|2|G|523
8C01|1|2|U|524
8C01|1|2|A|525
8C01|1|2|A|526
8C01|1|2|A|527
8C01|1|2|U|528
8C01|1|2|A|529
8C01|1|2|C|530
8C01|1|2|C|531
8C01|1|2|U|532

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A

Chain t

Ribosome biogenesis protein TSR1