HL_8C01_024

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8C01|1|2|G|1245, 8C01|1|2|C|1246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C01_024 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3305

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8C01|1|2|A|1238
8C01|1|2|U|1239
8C01|1|2|U|1240
8C01|1|2|G|1241
8C01|1|2|A|1242
8C01|1|2|G|1243
8C01|1|2|A|1244
8C01|1|2|G|1245
8C01|1|2|C|1246
8C01|1|2|U|1247

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain E

40S ribosomal protein S15

Chain e

Essential nuclear protein 1