HL_8C01_027

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C01_027 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1314

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8C01|1|2|C|1359
8C01|1|2|A|1360
8C01|1|2|U|1361
8C01|1|2|U|1362
8C01|1|2|U|1363
8C01|1|2|G|1364

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain I

40S ribosomal protein S19-A