HL_8C01_031

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

8C01|1|2|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C01_031 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.2016

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8C01|1|2|G|1594
8C01|1|2|U|1595
8C01|1|2|C|1596
8C01|1|2|A|1597
8C01|1|2|U|1598
8C01|1|2|C|1599
8C01|1|2|A|1600
8C01|1|2|G|1601
8C01|1|2|C|1602

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain I

40S ribosomal protein S19-A