HL_8C83_016

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C83|1|2|U|650
8C83|1|2|G|651
8C83|1|2|G|652
8C83|1|2|C|653
8C83|1|2|C|654
8C83|1|2|G|655
8C83|1|2|G|656
8C83|1|2|U|657
8C83|1|2|C|658
8C83|1|2|G|676
8C83|1|2|G|677
8C83|1|2|A|678
8C83|1|2|U|679
8C83|1|2|U|680
8C83|1|2|U|681
8C83|1|2|C|682
8C83|1|2|C|683
8C83|1|2|A|684

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A