HL_8C83_017

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

8C83|1|2|C|709, 8C83|1|2|U|711, 8C83|1|2|G|714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C83_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3073

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8C83|1|2|G|703
8C83|1|2|C|704
8C83|1|2|U|705
8C83|1|2|A|706
8C83|1|2|A|707
8C83|1|2|C|708
8C83|1|2|C|709
8C83|1|2|U|710
8C83|1|2|U|711
8C83|1|2|G|712
8C83|1|2|A|713
8C83|1|2|G|714
8C83|1|2|C|726
8C83|1|2|U|727
8C83|1|2|U|728
8C83|1|2|G|729
8C83|1|2|G|730
8C83|1|2|C|731
8C83|1|2|G|732
8C83|1|2|A|733
8C83|1|2|A|734
8C83|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A