HL_8C83_028

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C83_028 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.2791

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8C83|1|2|A|829
8C83|1|2|U|830
8C83|1|2|U|831
8C83|1|2|U|832
8C83|1|2|U|833
8C83|1|2|G|834
8C83|1|2|U|835
8C83|1|2|U|836
8C83|1|2|G|837
8C83|1|2|G|838
8C83|1|2|U|839
8C83|1|2|U|840
8C83|1|2|U|841
8C83|1|2|C|842
8C83|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A