HL_8C8X_003

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

8C8X|1|A|A|125, 8C8X|1|A|A|126, 8C8X|1|A|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.138

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8C8X|1|A|G|123
8C8X|1|A|G|124
8C8X|1|A|A|125
8C8X|1|A|A|126
8C8X|1|A|A|127
8C8X|1|A|C|128

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23