HL_8C8X_004

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8C8X|1|A|U|138, 8C8X|1|A|U|139, 8C8X|1|A|G|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_004 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.2055

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8C8X|1|A|U|137
8C8X|1|A|U|138
8C8X|1|A|U|139
8C8X|1|A|C|140
8C8X|1|A|G|141
8C8X|1|A|A|142

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23