HL_8C8X_034

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8C8X|1|A|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.2556

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8C8X|1|A|G|1389
8C8X|1|A|U|1390
8C8X|1|A|U|1391
8C8X|1|A|A|1392
8C8X|1|A|A|1393
8C8X|1|A|U|1394
8C8X|1|A|A|1395
8C8X|1|A|U|1396
8C8X|1|A|U|1397
8C8X|1|A|C|1398

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23