3D structure

PDB id
8C8X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.93 Å

Loop

Sequence
UAGAGAAUA
Length
9 nucleotides
Bulged bases
8C8X|1|A|A|1634
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8C8X_040 not in the Motif Atlas
Homologous match to HL_4WF9_039
Geometric discrepancy: 0.5139
The information below is about HL_4WF9_039
Detailed Annotation
GNRA with extra cWW
Broad Annotation
GNRA with extra cWW
Motif group
HL_20167.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

8C8X|1|A|U|1629
8C8X|1|A|A|1630
8C8X|1|A|G|1631
8C8X|1|A|A|1632
8C8X|1|A|G|1633
8C8X|1|A|A|1634
8C8X|1|A|A|1635
8C8X|1|A|U|1636
8C8X|1|A|A|1637

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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