HL_8C8X_040

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

8C8X|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_040 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.5139

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8C8X|1|A|U|1629
8C8X|1|A|A|1630
8C8X|1|A|G|1631
8C8X|1|A|A|1632
8C8X|1|A|G|1633
8C8X|1|A|A|1634
8C8X|1|A|A|1635
8C8X|1|A|U|1636
8C8X|1|A|A|1637

Current chains

Chain A

23S rRNA

Nearby chains