HL_8C8X_042

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8C8X|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_042 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3366

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8C8X|1|A|C|1727
8C8X|1|A|C|1728
8C8X|1|A|U|1729
8C8X|1|A|C|1730
8C8X|1|A|G|1731
8C8X|1|A|C|1732
8C8X|1|A|G|1733

Current chains

Chain A

23S rRNA

Nearby chains