HL_8C8X_048

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CGAAAUUCCCCUG

Length

13 nucleotides

Bulged bases

8C8X|1|A|U|1940, 8C8X|1|A|C|1961, 8C8X|1|A|U|1963

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_048 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.2584

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8C8X|1|A|C|1934
8C8X|1|A|G|1935
8C8X|1|A|A|1936
8C8X|1|A|A|1937
8C8X|1|A|A|1938
8C8X|1|A|U|1939
8C8X|1|A|U|1940
8C8X|1|A|C|1941
8C8X|1|A|C|1942
8C8X|1|A|C|1961
8C8X|1|A|C|1962
8C8X|1|A|U|1963
8C8X|1|A|G|1964

Current chains

Chain A

23S rRNA

Nearby chains