HL_8C8X_049

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8C8X|1|A|A|2030, 8C8X|1|A|A|2031, 8C8X|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.2287

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

8C8X|1|A|G|2027
8C8X|1|A|U|2028
8C8X|1|A|G|2029
8C8X|1|A|A|2030
8C8X|1|A|A|2031
8C8X|1|A|G|2032
8C8X|1|A|A|2033
8C8X|1|A|U|2034
8C8X|1|A|G|2035
8C8X|1|A|C|2036

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3