HL_8C8X_054

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

8C8X|1|A|A|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_054 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.2493

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8C8X|1|A|G|2303
8C8X|1|A|G|2304
8C8X|1|A|U|2305
8C8X|1|A|C|2306
8C8X|1|A|G|2307
8C8X|1|A|G|2308
8C8X|1|A|A|2309
8C8X|1|A|C|2310
8C8X|1|A|A|2311
8C8X|1|A|U|2312
8C8X|1|A|C|2313

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5