HL_8C8X_058

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8C8X|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1532

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

8C8X|1|A|U|2404
8C8X|1|A|G|2405
8C8X|1|A|A|2406
8C8X|1|A|A|2407
8C8X|1|A|U|2408
8C8X|1|A|G|2409
8C8X|1|A|G|2410
8C8X|1|A|A|2411
8C8X|1|A|A|2412
8C8X|1|A|G|2413

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15