HL_8C8X_059

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CCAAGAGUUCAUAUCGACG

Length

19 nucleotides

Bulged bases

8C8X|1|A|U|2473, 8C8X|1|A|U|2474, 8C8X|1|A|C|2475, 8C8X|1|A|U|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8X|1|A|C|2466
8C8X|1|A|C|2467
8C8X|1|A|A|2468
8C8X|1|A|A|2469
8C8X|1|A|G|2470
8C8X|1|A|A|2471
8C8X|1|A|G|2472
8C8X|1|A|U|2473
8C8X|1|A|U|2474
8C8X|1|A|C|2475
8C8X|1|A|A|2476
8C8X|1|A|U|2477
8C8X|1|A|A|2478
8C8X|1|A|U|2479
8C8X|1|A|C|2480
8C8X|1|A|G|2481
8C8X|1|A|A|2482
8C8X|1|A|C|2483
8C8X|1|A|G|2484

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16