HL_8C8Y_014

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_014 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.114

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8C8Y|1|A|C|462
8C8Y|1|A|G|463
8C8Y|1|A|U|464
8C8Y|1|A|G|465
8C8Y|1|A|A|466
8C8Y|1|A|G|467

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4