HL_8C8Y_020

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

8C8Y|1|A|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_020 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.3293

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8C8Y|1|A|C|640
8C8Y|1|A|U|641
8C8Y|1|A|U|642
8C8Y|1|A|A|643
8C8Y|1|A|A|644
8C8Y|1|A|C|645
8C8Y|1|A|U|646
8C8Y|1|A|G|647
8C8Y|1|A|G|648

Current chains

Chain A

23S rRNA

Nearby chains