HL_8C8Y_022

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

8C8Y|1|A|U|747, 8C8Y|1|A|A|751, 8C8Y|1|A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_022 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1469

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8C8Y|1|A|U|744
8C8Y|1|A|G|745
8C8Y|1|A|U|746
8C8Y|1|A|U|747
8C8Y|1|A|G|748
8C8Y|1|A|A|749
8C8Y|1|A|A|750
8C8Y|1|A|A|751
8C8Y|1|A|A|752
8C8Y|1|A|A|753

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain S

50S ribosomal protein L22