HL_8C8Y_025

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8C8Y|1|A|U|958, 8C8Y|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.4964

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8C8Y|1|A|U|955
8C8Y|1|A|G|956
8C8Y|1|A|C|957
8C8Y|1|A|U|958
8C8Y|1|A|A|959
8C8Y|1|A|A|960
8C8Y|1|A|C|961
8C8Y|1|A|G|962

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA