HL_8C8Y_034

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8C8Y|1|A|C|1493, 8C8Y|1|A|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_034 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1259

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8C8Y|1|A|G|1492
8C8Y|1|A|C|1493
8C8Y|1|A|A|1494
8C8Y|1|A|A|1495
8C8Y|1|A|A|1496
8C8Y|1|A|U|1497
8C8Y|1|A|C|1498

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2