HL_8C8Y_053

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_053 not in the Motif Atlas

Homologous match to HL_7RQB_058

Geometric discrepancy: 0.1398

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8C8Y|1|A|C|2374
8C8Y|1|A|G|2375
8C8Y|1|A|A|2376
8C8Y|1|A|A|2377
8C8Y|1|A|A|2378
8C8Y|1|A|G|2379

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L18