HL_8C8Y_055

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_055 not in the Motif Atlas

Geometric match to HL_7A0S_005

Geometric discrepancy: 0.1893

The information below is about HL_7A0S_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8C8Y|1|A|C|2658
8C8Y|1|A|G|2659
8C8Y|1|A|A|2660
8C8Y|1|A|G|2661
8C8Y|1|A|A|2662
8C8Y|1|A|G|2663

Current chains

Chain A

23S rRNA

Nearby chains