HL_8C8Y_059

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8C8Y|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_059 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0914

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8C8Y|1|A|G|2819
8C8Y|1|A|A|2820
8C8Y|1|A|A|2821
8C8Y|1|A|G|2822
8C8Y|1|A|A|2823
8C8Y|1|A|C|2824
8C8Y|1|A|G|2825
8C8Y|1|A|A|2826
8C8Y|1|A|C|2827

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17