HL_8C8Z_008

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Z_008 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.2798

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

13

Unit IDs

8C8Z|1|A|C|246
8C8Z|1|A|G|247
8C8Z|1|A|G|248
8C8Z|1|A|C|249
8C8Z|1|A|G|250
8C8Z|1|A|A|251
8C8Z|1|A|G|252

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15