HL_8C8Z_012

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GGACACGUGGUAUCC

Length

15 nucleotides

Bulged bases

8C8Z|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Z_012 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.3304

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8C8Z|1|A|G|380
8C8Z|1|A|G|381
8C8Z|1|A|A|382
8C8Z|1|A|C|383
8C8Z|1|A|A|384
8C8Z|1|A|C|385
8C8Z|1|A|G|386
8C8Z|1|A|U|387
8C8Z|1|A|G|388
8C8Z|1|A|G|389
8C8Z|1|A|U|390
8C8Z|1|A|A|391
8C8Z|1|A|U|392
8C8Z|1|A|C|393
8C8Z|1|A|C|394

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28