HL_8C8Z_014

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

8C8Z|1|A|U|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Z_014 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.2331

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8C8Z|1|A|C|462
8C8Z|1|A|G|463
8C8Z|1|A|U|464
8C8Z|1|A|G|465
8C8Z|1|A|A|466
8C8Z|1|A|G|467

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4