HL_8C8Z_032

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

8C8Z|1|A|C|1493, 8C8Z|1|A|A|1496, 8C8Z|1|A|U|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Z_032 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2119

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8C8Z|1|A|G|1491
8C8Z|1|A|G|1492
8C8Z|1|A|C|1493
8C8Z|1|A|A|1494
8C8Z|1|A|A|1495
8C8Z|1|A|A|1496
8C8Z|1|A|U|1497
8C8Z|1|A|C|1498
8C8Z|1|A|C|1499

Current chains

Chain A

23S rRNA

Nearby chains