HL_8C90_013

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGGACCAUCC

Length

10 nucleotides

Bulged bases

8C90|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C90_013 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.334

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8C90|1|A|G|409
8C90|1|A|G|410
8C90|1|A|G|411
8C90|1|A|A|412
8C90|1|A|C|413
8C90|1|A|C|414
8C90|1|A|A|415
8C90|1|A|U|416
8C90|1|A|C|417
8C90|1|A|C|418

Current chains

Chain A

23S rRNA

Nearby chains