HL_8C90_043

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C90_043 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.2794

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

8C90|1|A|U|2324
8C90|1|A|G|2325
8C90|1|A|C|2326
8C90|1|A|A|2327
8C90|1|A|A|2328
8C90|1|A|U|2329
8C90|1|A|G|2330
8C90|1|A|G|2331

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L27