HL_8C98_028

3D structure

PDB id

8C98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.66 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

8C98|1|A|U|1325, 8C98|1|A|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C98_028 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.2704

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8C98|1|A|G|1324
8C98|1|A|U|1325
8C98|1|A|U|1326
8C98|1|A|A|1327
8C98|1|A|A|1328
8C98|1|A|U|1329
8C98|1|A|C|1330

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22