HL_8CA7_007

3D structure

PDB id

8CA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Omadacycline and spectinomycin bound to the 30S ribosomal subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8CA7|1|A|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CA7_007 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.2684

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8CA7|1|A|G|1134
8CA7|1|A|U|1135
8CA7|1|A|C|1136
8CA7|1|A|C|1137
8CA7|1|A|G|1138
8CA7|1|A|G|1139
8CA7|1|A|C|1140

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9