3D structure

PDB id
8CA7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Omadacycline and spectinomycin bound to the 30S ribosomal subunit head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.06 Å

Loop

Sequence
UGAAAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CA7_008 not in the Motif Atlas
Homologous match to HL_4LFB_027
Geometric discrepancy: 0.2584
The information below is about HL_4LFB_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8CA7|1|A|U|1165
8CA7|1|A|G|1166
8CA7|1|A|A|1167
8CA7|1|A|A|1169
8CA7|1|A|A|1170
8CA7|1|A|A|1171

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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