HL_8CA7_010

3D structure

PDB id

8CA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Omadacycline and spectinomycin bound to the 30S ribosomal subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CA7_010 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0895

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8CA7|1|A|C|1314
8CA7|1|A|U|1315
8CA7|1|A|G|1316
8CA7|1|A|C|1317
8CA7|1|A|A|1318
8CA7|1|A|A|1319
8CA7|1|A|C|1320
8CA7|1|A|U|1321
8CA7|1|A|C|1322
8CA7|1|A|G|1323

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19