HL_8CAH_016

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCGGUCGGAUU

Length

12 nucleotides

Bulged bases

8CAH|1|2|G|655, 8CAH|1|2|C|658

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAH_016 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3204

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

8CAH|1|2|G|652
8CAH|1|2|C|653
8CAH|1|2|C|654
8CAH|1|2|G|655
8CAH|1|2|G|656
8CAH|1|2|U|657
8CAH|1|2|C|658
8CAH|1|2|G|676
8CAH|1|2|G|677
8CAH|1|2|A|678
8CAH|1|2|U|679
8CAH|1|2|U|680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain p

Eukaryotic translation initiation factor 3 subunit B