HL_8CAH_017

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAACC

Length

23 nucleotides

Bulged bases

8CAH|1|2|A|713, 8CAH|1|2|C|726

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CAH|1|2|G|703
8CAH|1|2|C|704
8CAH|1|2|U|705
8CAH|1|2|A|706
8CAH|1|2|A|707
8CAH|1|2|C|708
8CAH|1|2|C|709
8CAH|1|2|U|710
8CAH|1|2|U|711
8CAH|1|2|G|712
8CAH|1|2|A|713
8CAH|1|2|G|714
8CAH|1|2|C|726
8CAH|1|2|U|727
8CAH|1|2|U|728
8CAH|1|2|G|729
8CAH|1|2|G|730
8CAH|1|2|C|731
8CAH|1|2|G|732
8CAH|1|2|A|733
8CAH|1|2|A|734
8CAH|1|2|C|735
8CAH|1|2|C|736

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-B

Chain T

40S ribosomal protein S6-B