3D structure

PDB id
8CAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin and Hygromycin B bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.08 Å

Loop

Sequence
GUUAAUACC
Length
9 nucleotides
Bulged bases
8CAI|1|A|U|467
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CAI_011 not in the Motif Atlas
Homologous match to HL_5J7L_012
Geometric discrepancy: 0.2216
The information below is about HL_5J7L_012
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8CAI|1|A|G|462
8CAI|1|A|U|463
8CAI|1|A|U|464
8CAI|1|A|A|465
8CAI|1|A|A|466
8CAI|1|A|U|467
8CAI|1|A|A|468
8CAI|1|A|C|469
8CAI|1|A|C|470

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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