HL_8CAI_011

3D structure

PDB id

8CAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin and Hygromycin B bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8CAI|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAI_011 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2216

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8CAI|1|A|G|462
8CAI|1|A|U|463
8CAI|1|A|U|464
8CAI|1|A|A|465
8CAI|1|A|A|466
8CAI|1|A|U|467
8CAI|1|A|A|468
8CAI|1|A|C|469
8CAI|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains