HL_8CAS_005
3D structure
- PDB id
- 8CAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAUUUAUACAG
- Length
- 12 nucleotides
- Bulged bases
- 8CAS|1|2|U|77
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CAS_005 not in the Motif Atlas
- Homologous match to HL_9PN5_078
- Geometric discrepancy: 0.5428
- The information below is about HL_9PN5_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_46419.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8CAS|1|2|C|70
8CAS|1|2|A|71
8CAS|1|2|A|72
8CAS|1|2|U|73
8CAS|1|2|U|74
8CAS|1|2|U|75
8CAS|1|2|A|76
8CAS|1|2|U|77
8CAS|1|2|A|78
8CAS|1|2|C|79
8CAS|1|2|A|80
8CAS|1|2|G|81
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain T
- 40S ribosomal protein S6-B
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