HL_8CAS_017

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAS_017 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.115

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CAS|1|2|A|520
8CAS|1|2|A|521
8CAS|1|2|U|522
8CAS|1|2|G|523
8CAS|1|2|U|524
8CAS|1|2|A|525
8CAS|1|2|A|526
8CAS|1|2|A|527
8CAS|1|2|U|528
8CAS|1|2|A|529
8CAS|1|2|C|530
8CAS|1|2|C|531
8CAS|1|2|U|532

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A